Table 3

List of small RNAs that are O2-responsive in at least one of the two phytopathogens D. dadantii and P. atrosepticum

ASAP Feature ID

Gene Name

Fold Change

References

D. dadantii

P. atrosepticum

E. coli

D. dadantii

P. atrosepticum

E. coli


ABF-0061315

ABL-0064934

arcZ

1.9

-1.2*

[115]

ABF-0061324

ABL-0061410

ABE-0001579

ffs

12.8

4.3

1.4*

[116-118]

ABF-0174125

ABL-0064933

fnrS

28.3

52.4

[113,114]

ABF-0061309

ABL-0064917

glmY

3

1.4*

[119-123]

ABF-0061313

ABL-0064935

glmZ

-0.8*

1.9*

[119-123]

ABF-0061316

ABL-0060542

ABE-0010269

rnpB

2.7

1.2*

1.6*

[12]

ABF-0061322

ABL-0061263

rsmB

3.7

1.2*

[124-126]

ABF-0061325

ABL-0062736

ryeA

2.3

-2.1

[127,128]

ABF-0061326

ABL-0062735

ryeB

5.4

-2.3

[127,128]

ABF-0061311

ABL-0063956

rygA

6.3

-2.0*

[129,130]

ABF-0061314

ABL-0060225

ABE-0012621

spf

16.3

-1.1*

2.08*

[131]

ABF-0061318

ABL-0060877

sraF

0.6*

-3

[132]

ABF-0061317

ABL-0060677

ABE-0009556

ssrS

5.2

2

1.75*

[133]

ABF-0061323

ABL-0061273

tff

-1.8

-1.1*

[134]


This list of small RNA genes are differentially expressed in one or both phytopathogens. Where there is a gene in E. coli in the group, the fold change is included. Statistically insignificant values are marked with an asterisk.

Babujee et al. BMC Genomics 2012 13:110   doi:10.1186/1471-2164-13-110

Open Data