Table 2

Comparison of divergent and differentially expressed genes in the phytopathogens to E. coli.

ASAP Feature ID

Gene

Name

Product

Fold change

D. dadantii

P. atrosepticum

E. coli

D. dadantii

P. atrosepticum

E. coli


ABF-0014955

ABL-0064548

ABE-0003424

putA

Proline dehydrogenase

5.3

-3.7

1*

ABF-0015852

ABL-0063738

ABE-0002201

putative lipoprotein

-3.4

6.3

1.2*

ABF-0015853

ABL-0063739

putative membrane protein

-5.1

6.5

ABF-0015854

ABL-0063740

IcmF-related protein

-4.9

7

ABF-0015858

ABL-0063744

putative chaperone

-4.3

10

ABF-0015859

ABL-0063745

putative membrane protein

-5.8

8.8

ABF-0015860

ABL-0063746

hypothetical protein

-3.6

9.9

ABF-0015861

ABL-0063747

putative lipoprotein

-4.4

8.6

ABF-0015862

ABL-0063748

hypothetical protein

-4.5

9.4

ABF-0015864

ABL-0063749

hypothetical protein

-4.4

6.8

ABF-0015865

ABL-0063750

hypothetical protein

-5.6

6.8

ABF-0015866

ABL-0063751

hypothetical protein

-4.6

9.1

ABF-0015868

ABL-0063752

hypothetical protein

-3.8

6.6

ABF-0018340

ABL-0061543

ABE-0002155

lipA

lipoate synthase

3

-3.3

-1.4*

ABF-0018771

ABL-0062484

cybC

soluble cytochrome b562

3.3

-17.6


This list of orthologous phytopathogen genes have a 1-1 relationship according to OrthoMCL and are differentially expressed with a 3 fold or more change in gene expression for both orthologs, but in opposite directions. Where there is a single E. coli ortholog in the group, the fold change is included, and, statistically insignificant values are marked with an asterisk. The gene names and products were selected from among the three organisms to favor the most correct or most potentially informative and edited slightly to unify the format.

Babujee et al. BMC Genomics 2012 13:110   doi:10.1186/1471-2164-13-110

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