This article is part of the supplement: The 2010 International Conference on Bioinformatics and Computational Biology (BIOCOMP 2010): Genomics
Protease-associated cellular networks in malaria parasite Plasmodium falciparum
1 Department of Bacteriology, American Type Culture Collection, Manassas, VA 20110, USA
2 Department of Biology, University of Texas at San Antonio, San Antonio, TX 78249, USA
3 College of Life Sciences, Zhejiang University, Hangzhou 310058, PR China
4 South Texas Center for Emerging Infectious Diseases, University of Texas at San Antonio, San Antonio, TX 78249, USA
BMC Genomics 2011, 12(Suppl 5):S9 doi:10.1186/1471-2164-12-S5-S9Published: 23 December 2011
Additional file 1:
P. falciparum proteases and their degrees of connectivity in protein association networks.
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Additional file 2:
The protein-protein associations involving proteases in Plasmodium falciparum.
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Additional file 3:
Functional categories involving protease associations identified by Gene Ontology enrichment analysis.
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Additional file 4:
The graph shows the set of proteins associated with the proteases thought to be part of the P. falciparum ubiquitin-proteasome protein degradation system. Nodes are colored according to their functional classification in the eggNOG database  (key is shown). Node size is proportional to the degree of the node. Confidence scores for the interactions among the nodes (S values from STRING) were divided into three groups - low (0.150-0.399), medium (0.400-0.700) and high (0.701-0.999); the groups are represented by thin, medium and heavy lines, respectively.
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