Table 2

Optimal parameters of the octamer predicted by RNAMotifModeler.

A

G

A

A

G

A

A

G


A

1.00

0.17

1.00

1.00

0.24

1.00

1.00

0.81

G

0.79

1.00

0.65

0.90

1.00

0.84

1.00

1.00

C

0.52

0.32

0.50

0.16

0.35

0.02

0.34

0.63

U

0.75

0.15

0.39

0.63

0.09

0.06

0.73

0.55

UP

0.99

0.96

0.99

0.99

0.98

0.99

0.92

0.83


The column headers represent the predicted reference motif. The first four rows indicate the retained binding affinity ratio corresponding to a sequence alteration from each nt in the reference motif. The last row shows the optimal unpaired probability (UP) for each nt of the predicted reference motif.

Wang et al. BMC Genomics 2011 12(Suppl 5):S8   doi:10.1186/1471-2164-12-S5-S8

Open Data