Table 3

Results from real data for given cutoff p-values

p-value

0.05

0.025

0.01

0.005

0.0025


q-cutoff

(from "qvalue")

MBIS

0.0422

0.0257

0.0132

0.00788

0.00468

T

0.0446

0.0313

0.0210

0.0158

0.0122

SAM

0.0738

0.0600

0.0556

0.0546

0.0544


# DE genes

MBIS

5290

4352

3383

2835

2383

T

4355

3096

1849

1230

792

SAM

3613

2223

958

482

242


# common

DE genes

MBIS, T

3503

2411

1371

890

556

MBIS, SAM

3608

2223

958

482

242

T, SAM

3145

1870

767

396

202


Est. FDR

MBIS

0.0742

0.0451

0.0232

0.0138

0.00823

T

0.0834

0.0586

0.0393

0.0295

0.0229


Chen et al. BMC Genomics 2011 12(Suppl 5):S7   doi:10.1186/1471-2164-12-S5-S7

Open Data