Table 1

Simulation results of numbers of TPs, and FPs from different methods (nde = 1000, rep = 3, b = 1.5, diff = c(3,6))

q-value

MBIS

SAM-T


S0 = 0

20

40

60

80

100


0.05

TP

957

244

0

0

0

0

0

0


FP

94

19

0

0

0

0

0

0


Est. FP

95

16


Obs. FDR

0.09

0.07

0

0

0

0

0

0


0.10

TP

976

669

0

0

0

0

0

0


FP

203

99

0

0

0

0

0

0


Est. FP

211

106


Obs. FDR

0.17

0.13

0

0

0

0

0

0


0.15

TP

983

821

0

771

835

821

877

891


FP

324

228

0

16

26

16

27

26


Est. FP

289

232


Obs. FDR

0.25

0.22

0

0

0.02

0.03

0.02

0.03


0.20

TP

992

896

474

893

910

909

917

932


FP

488

379

44

80

92

81

85

75


Est. FP

474

388


Obs. FDR

0.33

0.30

0.08

0.08

0.09

0.08

0.08

0.07


0.25

TP

994

924

704

916

926

929

935

949


FP

632

529

116

145

142

134

141

129


Est. FP

620

552


Obs. FDR

0.39

0.36

0.14

0.14

0.13

0.13

0.13

0.12


Chen et al. BMC Genomics 2011 12(Suppl 5):S7   doi:10.1186/1471-2164-12-S5-S7

Open Data