Table 7

SNVs with |ΔDS |>0.04 in Q1, Q2 and disease liability

trait

SNV name

Gene name

AA changes

ΔDS

Major Allele Score

Q1

C19S4815

HIF3A

R→C

-0.10

0.81

Q1

C4S1879

KDR

V →M

0.04

0.11

Q2

C9S377

VLDLR

W→ C

0.18

0.51

Q2

C9S444

VLDLR

D→ Y

-0.16

0.36

Q2

C10S3050

SIRT1

P → L

-0.16

0.33

Q2

C8S476

LPL

I→S

0.15

0.17

Q2

C8S530

LPL

V→ G

0.13

0.32

Q2

C6S5446

VNN3

V→ I

-0.05

0.44

Q2

C8S442

LPL

D→N

-0.04

0.29

disease Liability

C17S4581

PRKCA

V → E

0.19

0.37

disease Liability

C18S2492

PIK3C3

V→ G

0.13

0.32

disease Liability

C1S9266

PIK3C2B

S → F

-0.13

0.77

disease Liability

C8S900

PTK2B

S → L

-0.13

0.38

disease Liability

C2S2307

BCL2L11

M → R

0.07

0.44

disease Liability

C1S9267

PIK3C2B

P → L

-0.06

0.83

Hu et al. BMC Genomics 2011 12(Suppl 5):S2   doi:10.1186/1471-2164-12-S5-S2