Table 4

S. aureus dataset. Details for input strains for the S. aureus case study. The first number in column called ’# of genes’ corresponds to the number of annotated genes, the second (in brackets) corresponds to the number of genes excluded in the study due to unusual start or stop codons or sequence length not divisible by three.

strain ID

source (GenBank ID)

# of genes

genome length

lab.


TW20 0582

FN433596

2769(5)

3043210

Welcome Trust Sanger Institute

JKD6008

CP002120

2680(0)

2924344

Monash University

JH9

CP000703

2769(5)

2906700

US DOE Joint Genome Institute

JH1

CP000736

2680(0)

2906507

US DOE Joint Genome Institute

MRSA252

BX571856

2697(0)

2902619

Sanger Institute

Mu3

AP009324

2746(0)

2880168

Juntendo University

Newman

AP009351

2655(5)

2878897

Juntendo University

Mu50

BA000017

2699(63)

2878529

Juntendo University

USA300 TCH1516

CP000730

2624(0)

2872915

Baylor College of Medicine

USA300 FPR3757

CP000255

2699(61)

2872769

University of California, San Francisco

ST398 S0385

AM990992

2657(0)

2872582

University Medical Centre Utrecht

ED133

CP001996

2560(0)

2832478

University of Edinburgh

ED98

CP001781

2699(0)

2824404

University of Edinburgh

04-02981

CP001844

2653(2)

2821452

Robert Koch Institute

NCTC 8325

CP000253

2661(0)

2821361

University of Oklahoma Health Sciences Center

MW2

BA000033

2650(59)

2820462

NITE

N315

BA000018

2892(0)

2814816

Juntendo University

JKD6159

CP002114

2632(6)

2811435

University of Melbourne

COL

CP000046

2593(59)

2809422

TIGR

TCH60

CP002110

2555(1)

2802675

Baylor College of Medicine

MSSA476

BX571857

2672(1)

2799802

Sanger Institute

RF122

AJ938182

2673(0)

2742531

University of Minnesota


Wozniak et al. BMC Genomics 2011 12(Suppl 2):S6   doi:10.1186/1471-2164-12-S2-S6

Open Data