This article is part of the supplement: Validation methods for functional genome annotation

Open Access Research

Synergistic use of plant-prokaryote comparative genomics for functional annotations

Svetlana Gerdes12, Basma El Yacoubi2, Marc Bailly2, Ian K Blaby2, Crysten E Blaby-Haas2, Linda Jeanguenin3, Aurora Lara-Núñez3, Anne Pribat3, Jeffrey C Waller3, Andreas Wilke4, Ross Overbeek1, Andrew D Hanson3* and Valérie de Crécy-Lagard2*

Author Affiliations

1 Fellowship for Interpretation of Genomes, Burr Ridge, IL, USA

2 Department of Microbiology and Cell Science, University of Florida, Gainesville, FL, USA

3 Department of Horticultural Sciences, University of Florida, Gainesville, FL, USA

4 Computation Institute, University of Chicago, Chicago, IL, USA

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BMC Genomics 2011, 12(Suppl 1):S2  doi:10.1186/1471-2164-12-S1-S2

Published: 15 June 2011

Additional files

Additional file 1:

Gene families shared between plants and prokaryotes: unique Arabidopsis genes (1A), paralogous Arabidopsis gene families with 2 members (1B), paralogous Arabidopsis gene families with 3 members (1C).

Format: XLS Size: 1.9MB Download file

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Additional file 2:

Gene families shared between plants and Prokaryotes, that were linked to general areas of metabolism and physiology, or associated with more specific potential functions. All additional files table were also made available on: http://www.theseed.org/Papers/20101120/. webcite

Format: XLS Size: 79KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data