Table 5

DNA and transcriptional variations of putative promoter variations between EA 2018 and ATCC 824

Gene locus in EA 2018

Gene locus in ATCC 824

Gene varition site in 2018

Gene varition site in 824

9 h (Log2Ratio 2018/824)

13 h (Log2Ratio 2018/824)

17 h (Log2Ratio 2018/824)

21 h (Log2Ratio 2018/824)

24 h (Log2Ratio 2018/824)

30 h (Log2Ratio 2018/824)

Product Name


CEA_G0334

CA_C0323

-96(A)

-(97-96)(-)

3.362504

2.662176

2.652177

3.222052

4.952742

2.037345

Sensory transduction histidine kinase

CEA_G0390

CA_C0380

-135,-131(A,A)

-135,-131(T,T)

-4.23921

5.06975

5.365591

5.142555

3.394778

2.099342

Periplasmic amino acid-binding protein

CEA_G2504

CA_C2490

-(13-12),-53(-,T)

-12,-(54-53)(C,-)

-2.39555

-3.35613

-3.80832

-2.2032

-2.7562

-1.10185

Xre family DNA-binding domain and TPR repeats containing protein

CEA_G3701

CA_C3694

-43(T)

-43(C)

4.045439

3.430925

3.859781

3.69948

4.131629

3.75554

TPR-repeat-containing protein

CEA_P0034

CA_P0035

-84(T)

-84(C)

3.331902

5.740285

6.007483

8.056546

6.576379

7.664691

Aldehyde-alcohol dehydrogenase, AdhEII


Hu et al. BMC Genomics 2011 12:93   doi:10.1186/1471-2164-12-93

Open Data