Table 6

Rearrangement hot spot (Rhs) elements found in safe strains.

RHS

Region (K-12)

W

K-12

B

Crooks


1

b0215-b0221

rhsW1 (0)

0 (0)

0 (0)

0 (0)

2

b0496-b0503

rhsW2a (1)

rhsD (1)

rhsD (1)

0 (0)

3

b0570-b0569

rhsW3 (3)

0 (0)

0 (0)

EcolC_3079 (3)

4

b0699-b0706

rhsW4a (1)

rhsC (1)

rhsC (1)

EcolC_2955 (0)

5

b1455-b1461

rhsW5 (0)

rhsEa (0)

rhsE (0)

EcolC_2201 (0)

6

b1976-b4497

0 (0)

0 (0)

0 (0)

EcolC_1663 (0)

7

b1988-b1990

0 (0)

0 (0)

0 (0)

EcolC_1653 (0)

8

b3481-b3485

0 (0)

rhsB (0)

rhsB (0)

EcolC_0234 (0)

9

b3592-b3596

rhsW6 (1)

rhsA (1)

rhsA (1)

EcolC_0120 (1)

10

b3936-b3937

rhsW7 (0)

0 (0)

0 (0)

EcolC_4081 (0)


a rhs gene is a pseudogene

Positions are based on K-12 annotation (U00096). The number of C-terminal tips is shown in brackets. Strains are W (ATCC 9637), K-12 (MG1655), B (REL606), and Crooks (ATCC 8739).

Archer et al. BMC Genomics 2011 12:9   doi:10.1186/1471-2164-12-9

Open Data