Table 2

Large mobile elements found in safe strains.

Insertion site

W

K-12

B

Crooks


c - mom

WMu (Mu)

-

-

-

thrW tRNA

-

CP4-6 (CP4)

-

-

argU tRNA

-

DLP12 (λ)

DLP12 (λ)

-

ybhC-ybhB

-

-

λ*B

λ*Cr

rybB ncRNA

Rybb*W (P2)

-

Rybb*B (P2)

Rybb*Cr (P2)

icdA

-

e14 (λ)

-

-

ompW

-

-

-

-

ttcA

Rac*W (λ)

Rac (λ)

Rac (λ)

-

ydfJ

Qin (λ)

Qin (λ)

Qin (λ)

Qin (λ)

cobU-yeeX

-

CP4-44 (CP4)

CP4-44 (CP4)

-

cyaR RNA

Wphi2 (P2)

ogr-D'

P2*B

-

argW tRNA

Argw*W (λ)

CPS-53 (KpLE1)

-

-

eutA

-

CPZ-55 (CP4)

-

CrpLE1

ssrA tmRNA

WpLE1

CP4-57 (CP4)

Ssra*Ba

CrpLE2

pheV tRNA

-

-

Phev*B (CP4)

CrpLE3

selC tRNA

WpLE2

-

Selc*B (CP4)

Selc*Cr (CP4)

pheU tRNA

-

-

-

Pheu1*Cr (CP4)

cpxP-fieF

Wphi1 (P2)

-

-

-

pheU tRNA

-

-

-

Pheu2*Cr(CP4)

leuX tRNA

WpLE3

KpLE2

KpLE2

KpLE2b


a Prophage type is unknown

b KpLE2 P4 integrase is interrupted by IS3

A '-' means that no mobile element was found at that insertion site. Prophage types are shown in brackets. Strains are W (ATCC 9637), K-12 (MG1655), B (REL606), Crooks (ATCC 8739).

Archer et al. BMC Genomics 2011 12:9   doi:10.1186/1471-2164-12-9

Open Data