Additional file 8.
List of unique iCA1273 reactions and metabolites compared to iAF1260. A list of new reactions and metabolites in iCA1273 which are not found in iAF1260. This file contains the following: 1. "Missing iAF1260 reactions" details reactions which occur in iAF1260 that are not present in W 2. "iCA1273 rxns miss K12 ortho" details reactions from iAF1260 which still occur in iCA1273 but are missing genes which are not present in the W genome. e.g. reaction "RPE" from iAF1260 can be catalyzed by the enzyme encoded by b3386 or b4301. However, in W, an ortholog for b4301 is not present while an ortholog for b3386 is present so the reaction still occurs within the cell.
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Archer et al. BMC Genomics 2011 12:9 doi:10.1186/1471-2164-12-9