Table 3

Results obtained from A. viridis EST database at each stage of analysis.

EST retrieved

Nr clones SignalP approved

blastp approved

Known structures found


motif 1

7

4

4

3

motif 2

51

13

13

1

motif 3

162

11

5

0

motif 4

211

16

16

3*

motif 5

26

2

2

-

motif 6

2

0

-

-

motif 7

10

0

-

-

motif 8

8

0

-

-

motif 9

59

2

2

-

motif 10

19

0

-

-

motif 11

81

5

-

-

motif 12

20

0

-

-

motif 13

5466

11

-

-

motif K

133

25

-

-

TOTAL

6222

89

42

7


The total number of sequences found in the database by pattern search designated as "EST retrieved". The number of Non-redundant (Nr) mature sequences keeping signal peptide for secretion designated as "SignalP approved". BlastP approved sequences by blastp and PSI-BLAST algorithm shown identity to anemone toxins, and the number of 100% homologues structures are in the last column.

* including truncated and long variants

Kozlov and Grishin BMC Genomics 2011 12:88   doi:10.1186/1471-2164-12-88

Open Data