Table 3

Soybean gene models and their Arabidopsis annotations within a syntenic region near the 1_0804 locus

Soybean Chromosome

Soybean gene model

Homologous cowpea locus

E-score

Arabidopsis annotation


Gm11

Glyma11g35090.1

-

1.00E-174

CHR2V8|COORD:16735456..16738238| similar to proline-rich family protein [Arabidopsis thaliana] (TAIR:AT3G09000.1)

Gm11

Glyma11g35100.1

-

1.00E-176

CHR5V8|COORD:1712951..1715640| ATE1 (DELAYED LEAF SENESCENCE 1); arginyltransferase

Gm11

Glyma11g35110.2

-

1.00E-59

CHR2V8|COORD:16755237..16756435| yippee family protein

Gm11

Glyma11g35110.1

-

1.00E-59

CHR2V8|COORD:16755237..16756435| yippee family protein

Gm11

Glyma11g35120.1

-

-

-

Gm11

Glyma11g35130.1

1_0804

1.00E-111

CHR2V8|COORD:16752962..16754268| LHCB4.3 (LIGHT HARVESTING COMPLEX PSII); chlorophyll binding

Gm11

Glyma11g35140.1

-

4.00E-24

CHR4V8|COORD:16426775..16427836| TAF8 (TBP-ASSOCIATED FACTOR 8); DNA binding

Gm11

Glyma11g35150.1

-

-

-

Gm11

Glyma11g35160.1

-

-

-

Gm11

Glyma11g35170.1

-

3.00E-67

CHR2V8|COORD:16750185..16751533| similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G55880.2)

Gm11

Glyma11g35180.1

-

-

-

Gm11

Glyma11g35190.1

-

-

-

Gm11

Glyma11g35200.1

-

-

-

Gm11

Glyma11g35210.1

-

1.00E-149

CHR2V8|COORD:5685088..5687703| ATCHX15 (cation/hydrogen exchanger 15); monovalent cation:proton antiporter

Gm11

Glyma11g35220.1

-

6.00E-11

CHR3V8|COORD:19436813..19438010| SYP122 (syntaxin 122); SNAP receptor

Gm11

Glyma11g35230.1

-

2.00E-11

CHR1V8|COORD:9715602..9720333| RNA helicase, putative

Gm11

Glyma11g35240.1

-

1.00E-113

CHR3V8|COORD:3511107..3512905| GDSL-motif lipase/hydrolase family protein

Gm11

Glyma11g35240.2

-

1.00E-113

CHR3V8|COORD:3511107..3512905| GDSL-motif lipase/hydrolase family protein

Gm11

Glyma11g35250.1

-

1.00E-10

CHR1V8|COORD:6781665..6782015| LCR78/PDF1.4 (Low-molecular-weight cysteine-rich 78)

Gm11

Glyma11g35260.2

-

7.00E-71

CHR1V8|COORD:6585078..6586299| TTN10 (TITAN 10)

Gm11

Glyma11g35260.1

-

7.00E-71

CHR1V8|COORD:6585078..6586299| TTN10 (TITAN 10)

Gm11

Glyma11g35270.1

-

7.00E-28

CHR2V8|COORD:16741623..16741958| ELF4 (EARLY FLOWERING 4)


Muchero et al. BMC Genomics 2011 12:8   doi:10.1186/1471-2164-12-8

Open Data