Table 4

Comparison of assembly statistics of fully sequenced fish genomes1 and some pilot studies2.

Species

Contig/scaffold3 N50(bp)

Number of contigs

Maximum contig/scaffold3 size (bp)

Average contig size (bp)

Total bases


Zebrafish1

25,000

119,136

N/A

11,856

~1 Gb

Medaka1

9,800

36,494

N/A

19,181

~700 Mb

Tetraodon1

16,000

49,609

258,000

6,289

~312 Mb

Atlantic cod1

7,128

135,024

117,463

4,658

~629 Mb

Fugu1

858,1153

45,024

7,245,4453

8,729

~393 Mb

Atlantic salmon2

13,455

158

38,211

6,827

~1 Mb

Catfish2

13,123

193

71,434

5,313

~1 Mb


Jiang et al. BMC Genomics 2011 12:629   doi:10.1186/1471-2164-12-629

Open Data