Table 1

Summary of Euphorbia fischeriana transcriptome assembly

Assembly statistics


Total number of mate-pair reads (before trimming)

17,502,188

Total number of read base pairs (bp)

1,312,664,100

Average read length (before trimming; bp)

75

Total number of read mate-pairs (after trimming)

17,073,322

Total number of read singletons (after trimming)

209,321

Average read length (after trimming; bp)

68

Total number of ESTs

1,884

Total number of EST base pairs (bp)

1,275,624

Average EST length

677 bp

Total number of transcripts assembled (pre-isoform filtering)

31,454

Total number of transcripts assembled (post-isoform filtering)

18,180

Average length of all transcripts (bp)

1,122

Transcripts with E-value > = 1e-05 against nr

15,191 (83.6%)

Average length of transcripts (bp)

1,066


Barrero et al. BMC Genomics 2011 12:600   doi:10.1186/1471-2164-12-600

Open Data