Alignment of the 5' and 3' terminal 80 bp from Ac, Ds2-21, and Ds2-31. All three 5' ends align well, except for two SNPs in Ds2-21. In contrast, the 3'ends of Ac and Ds2-21 align well, but the 3' end of Ds2-31 is interrupted by a duplication and a deletion.
Du et al. BMC Genomics 2011 12:588 doi:10.1186/1471-2164-12-588