Table 1

P. hawaiensis transcriptome assembly statistics

Raw reads (base pairs)

3,172,925 (1,179,544,291)


Assembled reads

3,157,373

Isotigs

35,301

Isotig N50

1,510

Singletons (% of assembled reads)

276,564 (8.8%)

# Unique BLAST hits

19,067

Isogroups ("genes")

25,735

Mean # isotigs per isogroup

1.4

Newbler Contigs ("exons")

89,664

Mean # contigs per isotig

2.1


Zeng et al. BMC Genomics 2011 12:581   doi:10.1186/1471-2164-12-581

Open Data