Table 1

Comparison between RNA-seq [17] (48 h) and microarray data for Chlamydomonas reinhardtii cultures incubated under nitrogen starvation conditions For microarray data average values for important genes during 96 h starvation are displayed (24 h, 48 h, 72 h, 96 h).

Reporter Identifier

Reporter Name

Reporter Description

Log2 ratio microarray

Log2 ratio RNA seq


nitrogen related genes

182971

NSG13

"nitrogen-starved gametogenesis 13"...

5.0

3.6

184661

NIT1

"nitrate reductase"...

4.6

7.9

192085

NII1

"Nitrite reductase"...

4.4

7.7

205647

NIT2

"transcription factor regulating nitrogen metabolism"...

1.5

2.6

188890

"NADH nitrate reductase"...

3.0

5.2

156131

AMT4

"Ammonium transporter"...

5.1

7.2

158745

AMT1

"Ammonium transporter"...

3.1

5.5

133971

GLN1

Glutamine synthetase

0.9

1

129468

GLN2

Glutamine synthetase

0.1

-0.3

136895

GLN3

Glutamine synthetase

6.5

6.6

147483

GLN4

Glutamine synthetase

2.3

1

photosynthetic related genes

184724

LHCSR1

"stress-related chlorophyll a/b binding protein 1"...

-2.4

-1.2

184731

LHCSR2

"Stress-related chlorophyll a/b binding protein 2"...

3.7

2.6

184730

LHCSR3

"Stress-related chlorophyll a/b binding protein 3"...

3.8

1.7

196341

PSBS1

"chloroplast Photosystem II-associated 22 kDa protein"...

2.0

6.9

171516

PSBS2

"chloroplast Photosystem II-associated 22 kDa protein"...

-0.3

196341

PSBX

"4.1 kDa photosystem II subunit"...

-2.1

6.9

205940

PSAL

"Photosystem I reaction center subunit XI"...

-2.4

0.0

192478

PSAK

"photosystem I reaction center subunit psaK"...

-2.3

-3.4

184810

LHCB4

"chlorophyll a-b binding protein of photosystem II"...

-2.4

-2.3

187025

LHCA8

"light-harvesting protein of photosystem I"...

-2.2

-4.6

192961

LHCA7

"light-harvesting protein of photosystem I"...

-2.5

-5.0

186299

LHCA6

"light-harvesting protein of photosystem I"...

-2.7

-5.4

153678

LHCA4

"light-harvesting protein of photosystem I"...

-2.6

-4.5

206001

LHCA1

"light-harvesting protein of photosystem I"...

-3.2

184397

LHCBM3

"Light-harvesting complex II chlorophyll a-b binding protein M3"...

-2.0

-3.7

184479

LHCBM9

"chlorophyll a-b binding protein of LHCII"...

-0.2

-1.5

126810

NAB1

"nucleic acid binding protein"...

-1.6

-4.1

other genes

185841

RDP3

"Rhodanese domain phosphatase"...

2.4

-3.4

196438

PTB5

"sodium/phosphate symporter"...

5.3

0.6

196465

PTB5

"sodium/phosphate symporter"...

4.3

1.7

183357

PTB3

"sodium/phosphate symporter"...

3.8

-0.6

96789

GPD4

"Glycerol-3-Phosphate Dehydrogenase/Dihydroxyacetone-3-Phosphate Reductase"...

2.8

1.4

146945

GPD1

"Glycerol-3-Phosphate Dehydrogenase/Dihydroxyacetone-3-phosphate Reductase"...

3.6

4.1

182461

GLD2

"glucose-6-phosphate dehydrogenase"...

2.3

4.1

191987

ARG1

"N-acetyl-gamma-glutamyl-phosphate reductase"...

2.8

0.8

R:191668/1

ICL1

"isocitrate lyase"

0.1

-5.8


Toepel et al. BMC Genomics 2011 12:579   doi:10.1186/1471-2164-12-579

Open Data