Table 1

Number of sequences obtained and analyzed in our study.

Genomic gag

Genomic 3'UTR

RNA gag sense

RNA 3'UTR sense

RNA 3'UTR antisense

Oregon-R

44

43

44

41

40

GIII

125

125

124

124

124

Taking into account the genomic copy number obtained for each strain (see Figure 1), the coverage is slightly higher than 1 for Oregon-R and slightly lower than 0.5 for GIII. Antisense strand amplification was performed only in the case of the 3'UTR due to its relative abundance.

Piñeyro et al. BMC Genomics 2011 12:573   doi:10.1186/1471-2164-12-573