Phylogenetic analysis of the sense sequences amplified for the 3'UTR fragment. All amplified sequences from genomic DNA of Oregon-R and GIII (names in green and orange, respectively) and from total RNA from 3rd instar larvae of Oregon-R and GIII (names in blue and red, respectively) were used. Also included are the previously annotated HeT-A sequences containing the analyzed fragment (shown in black). A. Phylogenetic tree constructed using all obtained sequences. The different subfamilies are indicated with boxes and corresponding letter. The position of sequences ORE-3Ub-30, ORE-3UB-41, ORE-3Ub-37, G3-3Ub-77, G3-3Ub-127, G3-3Ub-113 and the previously known 4R6268 are indicated. B. Bar chart representing the relative abundance of each subfamily.
Piñeyro et al. BMC Genomics 2011 12:573 doi:10.1186/1471-2164-12-573