Table 2 

Genes for which RNA level is controlled by the two proximal and distal regions in interaction similarly to the adiposity phenotype 

Classical Model 
Interaction Model 
Test Lean1/lean2 



oligo ID 
HGNC 
corr 
location 
maxLRT 
location 
maxLRT 
DE 
pvalue 


RIGG00027 
BPNT1 
0.36 
182 
9.6* 
95 
9.8^{+} 
/+ 
+ 
RIGG05332 
NULL 
0.39 
178 
6.3^{+} 
77 
11.5* 
/+ 
* 
RIGG07405 
P4HA2 
0.38 
185 
7.3^{+} 
73 
12.0* 
/+ 
+ 
RIGG12578 
NULL 
0.58 
158 
11.7* 
86 
9.3^{+} 
+/ 
+ 


For each gene, are given the oligonucleotide identifier (oligo ID), the HGNC abbreviation (HGNC), the Pearson correlation with the abdominal fatness (corr), the maximum LRT location in cM and the maximum LRT (maxLRT) using either the classical model or the interaction model. The two last columns are related to the statistical test comparing the expression between the lean1 and the lean2 subtypes: the differential expression between the two subtypes (DE = lean1/lean2) and the pvalue associated are indicated. * and +: pvalue at the chromosome level <0.05 and <0.1 respectively. 

Blum et al. BMC Genomics 2011 12:567 doi:10.1186/1471216412567 