Table 5

Non Alu repeat families in human genome (hg18) with HNF4α binding sites.

    Sorted by number of HNF4α sites

    Sorted by prevalence of HNF4α sites

Transposon

# with H4

# in hg18

%

Transposon

# with H4

# in hg18

%


MIRb

2333

223,605

1.04

SVA_C

215

281

76.51

L2a

2256

169,417

1.33

SVA_B

341

465

73.33

MIR

1586

173,924

0.91

SVA_D

932

1370

68.03

L2c

1455

139,570

1.04

SVA_A

132

259

50.97

Tigger2a

1186

3,316

35.77

(CCGGA)n

1

2

50.00

L2b

1050

96,999

1.08

HSATI

19

42

45.24

FRAM

1005

8,490

11.84

LTR22A

80

187

42.78

SVA_D

932

1,370

68.03

Tigger2a

1186

3316

35.77

L2

898

56,019

1.60

HERV-Fc2-int

1

3

33.33

MIR3

849

90,205

0.94

HERVE-int

80

250

32.00

MIRc

828

102,646

0.81

SVA_F

278

998

27.86

MSTA-int

730

3,104

23.52

Tigger2b_Pri

528

2000

26.40

L1PB1

698

13,202

5.29

PABL_A

126

511

24.66

MLT2A2

646

3,865

16.71

MSTB2-int

22

91

24.18

MER20

608

16,569

3.67

MSTA-int

730

3104

23.52

L1MC1

605

12,979

4.66

MER50

573

2527

22.68

MER50

573

2,527

22.68

LTR14B

78

357

21.85

Tigger2

546

2,735

19.96

MSTB-int

187

866

21.59

Tigger2b_Pri

528

2,000

26.40

MER8

408

1931

21.13

L1M5

482

63,783

0.76

MSTC-int

38

183

20.77

MLT1D

473

20,459

2.31

Tigger2

546

2735

19.96


Bolotin et al. BMC Genomics 2011 12:560   doi:10.1186/1471-2164-12-560

Open Data