Table 7

CNVs selected for validation by qPCR

CNV ID

Entrez Gene

Log2 ratio

P-value


Chr2_CNV_29

PLA2G2D1

-1.799

0


Chr3_CNV_18

LOC781675

0.813

3.06E-99


Chr5_CNV_6

-

0.871

3.44E-112


Chr5_CNV_46

-

2.777

0


Chr6_CNV_32

LOC785098

0.811

3.47E-141


Chr10_CNV_24

-

-2.954

0


Chr13_CNV_50

ATRN

0.858

4.00E-171


Chr15_CNV_26

-

0.806

3.79E-109


Chr18_CNV_75

-

0.951

1.64E-138


Chr24_CNV_6

SERPINB5

0.991

8.42E-164


Five genic and five non-genic CNVs were selected for validation by qPCR. Entrez Gene names are given for genic CNVs. The log2 ratios and p-values obtained from the CNV-seq software are shown. Positive log2 ratios indicate higher read depth in the Holstein animal.

Stothard et al. BMC Genomics 2011 12:559   doi:10.1186/1471-2164-12-559

Open Data