Table 4

Comparison of genotypes from a custom array to sequencing SNPs

Source of SNPs

SNPs tested

SNPs validated


Holstein

427

420 (98%)


Black Angus

422

415 (98%)


To estimate the false positive rate of SNP discovery, a subset of the SNPs discovered by sequencing was genotyped in 1083 animals.

Stothard et al. BMC Genomics 2011 12:559   doi:10.1186/1471-2164-12-559

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