Table 2

Transcripts assembly

=

C

e

i

j

o

p

u

Total


Large White

2178

22243

11328

67989

5557

3866

6775

72288

192224


(%)

1.13

11.57

5.89

35.37

2.89

2.01

3.52

37.61

100


Iberian

2000

21580

10349

57623

4530

3341

5752

55617

160792


(%)

1.24

13.42

6.44

35.84

2.82

2.08

3.58

34.59

100


The number of transcripts assembled with Cufflinks and the percentage they represent in each sample. The high number of assembled transcripts is probably an artifact due to truncated Cufflinks assemblies. Class codes described by Cuffcompare: "=" Exactly equal to the reference annotation, "c " Contained in the reference, annotation, "e" possible pre-mRNA molecule, "i " An exon falling into a intron of the reference, "j " New isoforms, "o" Unknown, generic overlap with reference, "p" Possible polymerase run-on fragment, "u" Unknown, intergenic transcript.

Esteve-Codina et al. BMC Genomics 2011 12:552   doi:10.1186/1471-2164-12-552

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