Table 2

Chicken ncRNAs cloned and presented as novel RNAs by Zhang at al [19] are homologs of well-known human ncRNAs

RNA ID1

GenBank ID

RNA name

Identifiable by Rfam search

Identifiable by snoRNAbase search

Cloned and properly identified by Shao et al. [17]


GGN11

EU240230

SNORD102B2

No

yes

no


GGN20

EU240238

SNORD1B

No

yes

yes (GGgCD64)


GGN86

EU240302

SNORD13

Yes

yes

no


GGN120

EU240333

fragment of SNORA84

Yes

yes

no


GGN148

EU240352

SNORD104

No

yes

no


GGN100

EU240315

SNORD11A

Yes

yes

yes (GGgCD12A)


GGN71

EU240287

SNORD127

Yes

yes

no


GGN107

EU240321

SNORD81

Yes

yes

yes (GGgCD31)


GGN52

EU240268

SNORD44

Yes

yes

yes (GGgCD6)


GGN34

EU240252

SNORD87C

No

yes

yes (GGgCD46a)


GGN108

EU240322

SNORD46A

No

yes

yes (GGgCD47a)


GGN80

EU240296

SNORD62

No

yes

yes (GGgCD14)


GGN82

EU240298

SNORD4

Yes

yes

yes (GGgCD4)


GGN17

EU240236

SNORD1A

No

yes

yes (GGgCD64)


GGN79

EU240295

SNORA77

Yes

yes

yes (GGgACA12)


GGN72

EU240288

SNORA40

Yes

no

yes (GGgACA20)


GGN87

EU240303

SNORA44

Yes

yes

no


GGN58

EU240274

SNORA17

Yes

yes

no


GGN56

EU240272

SNORA15

Yes

no

no


GGN32

EU240250

SNORA31B

Yes

no

yes (GGgACA38)


GGN123

EU240336

SNORA4

No

no

yes (GGgACA26)


GGN74

EU240290

SNORA64

No

no

yes (GGgACA47)


GGN103

EU240318

U4atac

Yes

no

no


GGN141

EU240348

SNORA25

No

yes

yes (GGgACA11)


GGN67

EU240283

fragment of SCARNA11

Yes

no

yes (GGgACA29)


GGN105

EU240320

NET33

No

no

no


GGN68

EU240284

SNORD97

No

yes

no


GGN46

EU240262

SNORD43

No

yes

yes (GGgCD29)


GGN147

EU240351

Vault RNA

Yes

no

no


GGN16

EU240235

fragment of SNORD46B

No

No

yes (GGgCD47b)


1 According to Zhang et al. [19];listed in the same order as in Table one in [19].

2 The SNORD102B transcript has a longer antisense element than SNORD102A, and thus can guide the modification the rRNA nucleotide adjacent to that guided by SNORD102A [16].

3 NET3 RNA is described by us [16] and is specific for vertebrates except placental mammals.

Makarova and Kramerov BMC Genomics 2011 12:543   doi:10.1186/1471-2164-12-543

Open Data