Pipeline used for sequence analysis. White boxes correspond to sequence generation, red boxes correspond to library quality control, assembly and annotation and green boxes correspond to abundance and functional analysis. The software suite or program used is indicated in the upper part of the box and the results of each step of the analysis are shown under the box. UE: unigene element; "G": genetic effect, "T": treatment effect and "GxT": genotype by treatment interaction effect. *E. grandis. sff files were obtained from Novaes et al. (2008). α: available at http://genotoul-contigbrowser.toulouse.inra.fr:9092/Eucalyptus/index.html webcite β: available at http://vm-bioinfo.toulouse.inra.fr/ng6/ webcite, user = euca; password = euca33bio!
Villar et al. BMC Genomics 2011 12:538 doi:10.1186/1471-2164-12-538