Table 1

Analysis of gene copy number in CBS7779 variants relative to strain H99.

Strain

SMG1 (chr 4)

CNN00820 (chr 13)

CND00707 (chr 4)


H99

1

1

1

JEC21

2.33

1.07

1.22

CBS7779 B1

1.1

1.09

ND

CBS7779 B2

1.08

0.95

ND

CBS7779 B3

1.16

1.08

ND

CBS7779 B4

1.1

1.03

1.08

CBS7779 B5

1.24

0.99

1.28

CBS7779 B6

1.16

1.01

1.37

CBS7779 B7

1.27

0.68

ND

CBS7779 B8

1.38

1.34

ND

CBS7779 B9

1.43

1.01

ND

CBS7779 B10

1.38

0.74

ND

CBS7779 B11

1.26

1.15

ND

CBS7779 B12

1.36

0.99

ND

CBS7779 W1

1.3

1.84

ND

CBS7779 W2

1.16

2.01

ND

CBS7779 W3

1.1

1.97

ND

CBS7779 W4

1.23

2.23

1.36

CBS7779 W5

1.11

1.85

1.24

CBS7779 W6

0.96

1.78

1.19

CBS7779 W7

1.29

1.8

ND

CBS7779 W8

1.13

2.66

ND

CBS7779 W9

1.25

2.89

ND

CBS7779 W10

1.15

2.01

ND

CBS7779 W11

1.15

2.87

ND

CBS7779 W12

1.13

3.1

ND


Quantitative PCR was used to examine copy number (2-ΔΔCt method).

ND, not determined

Hu et al. BMC Genomics 2011 12:526   doi:10.1186/1471-2164-12-526

Open Data