Table 6

Transcripts under expressed at 50 PSU

Normalised abundance

Pairwise differential

closest BLAST

Contig

Length (bp)

total reads

50 PSU

30 PSU

abundance (α 0.05)

ID (BLAST)

hit (GI No.)


05236

109

26

0.1

2.3

-

-

06334

295

119

1.1

9.3

-

-

00224

199

35

0.4

2.9

-

-

06976

117

295

3.6

24.2

putative fumarate reductase

74581896

07063

294

148

3.1

10.4

-

-

06664

272

131

3.2

9.5

-

-

06325

275

442

11.3

31.6

-

-

05868

162

138

3.6

9.8

-

-

05866

175

279

7.1

19.1

-

-

04983

255

111

2.8

7.1

p < 0.001

-

-

06926

166

179

5.1

11.7

-

-

05228

243

192

6.4

12.6

-

-

05401

151

336

11.2

21.1

-

-

05956

131

691

26.2

42.8

-

-

06694

123

480

18.2

29.7

-

-

06660

221

632

26.2

37.4

calreticulin precursor

11131631

07447

146

725

30.5

42.5

-

-

05032

247

1058

46.8

60.3

conserved hypothetical protein

239877215

07041

200

1520

68.3

85.7

40S ribosomal protein S25

112253591

06775

258

2114

96.4

118.2

60S ribosomal protein L26-1

27735242

05386

296

160

4.3

11.3

-

-


Lowe et al. BMC Genomics 2011 12:519   doi:10.1186/1471-2164-12-519

Open Data