Table 6 |
|||||||
|
Transcripts under expressed at 50 PSU |
|||||||
|
Normalised abundance |
Pairwise differential |
closest BLAST |
|||||
|
Contig |
Length (bp) |
total reads |
50 PSU |
30 PSU |
abundance (α 0.05) |
ID (BLAST) |
hit (GI No.) |
|
|
|||||||
|
05236 |
109 |
26 |
0.1 |
2.3 |
- |
- |
|
|
06334 |
295 |
119 |
1.1 |
9.3 |
- |
- |
|
|
00224 |
199 |
35 |
0.4 |
2.9 |
- |
- |
|
|
06976 |
117 |
295 |
3.6 |
24.2 |
putative fumarate reductase |
74581896 |
|
|
07063 |
294 |
148 |
3.1 |
10.4 |
- |
- |
|
|
06664 |
272 |
131 |
3.2 |
9.5 |
- |
- |
|
|
06325 |
275 |
442 |
11.3 |
31.6 |
- |
- |
|
|
05868 |
162 |
138 |
3.6 |
9.8 |
- |
- |
|
|
05866 |
175 |
279 |
7.1 |
19.1 |
- |
- |
|
|
04983 |
255 |
111 |
2.8 |
7.1 |
p < 0.001 |
- |
- |
|
06926 |
166 |
179 |
5.1 |
11.7 |
- |
- |
|
|
05228 |
243 |
192 |
6.4 |
12.6 |
- |
- |
|
|
05401 |
151 |
336 |
11.2 |
21.1 |
- |
- |
|
|
05956 |
131 |
691 |
26.2 |
42.8 |
- |
- |
|
|
06694 |
123 |
480 |
18.2 |
29.7 |
- |
- |
|
|
06660 |
221 |
632 |
26.2 |
37.4 |
calreticulin precursor |
11131631 |
|
|
07447 |
146 |
725 |
30.5 |
42.5 |
- |
- |
|
|
05032 |
247 |
1058 |
46.8 |
60.3 |
conserved hypothetical protein |
239877215 |
|
|
07041 |
200 |
1520 |
68.3 |
85.7 |
40S ribosomal protein S25 |
112253591 |
|
|
06775 |
258 |
2114 |
96.4 |
118.2 |
60S ribosomal protein L26-1 |
27735242 |
|
|
05386 |
296 |
160 |
4.3 |
11.3 |
- |
- |
|
|
|
|||||||
|
Lowe et al. BMC Genomics 2011 12:519 doi:10.1186/1471-2164-12-519 |
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