Table 5

Transcripts over expressed at 50 PSU

Total

Normalised abundance

Pairwise differential

Closest BLAST

Contig

Length (bp)

reads

50 PSU

30 PSU

abundance (α 0.05)

ID (BLAST)

hit (GI No.)


05386

296

160

4.3

11.3

-

-

07320

629

210

14.3

8.1

-

-

00270

1938

496

32.6

19.9

elongation factor 2

3122059

06781

844

387

24.9

15.9

p < 0.001

deoxyribonuclease-2-alpha

3182984

07146

780

603

38.1

24.7

putative phosphoethanolamine N-methyltransferase 2

24212079

06493

249

738

44.5

32.8

glyceraldehyde-3-phosphate dehydrogenase

462139

06673

118

1158

69.7

51.5

heat shock protein 90

38885054

06337

220

893

53.7

39.8

cysteine proteinase precursor

32172429

06388

572

1617

94.2

74.4

cathepsin B-like cysteine proteinase

1169087


Lowe et al. BMC Genomics 2011 12:519   doi:10.1186/1471-2164-12-519

Open Data