Table 1

HSPs statistics concerning the Blast2seq application of the rCRS sequence (J01415)

HSP similarities

HSP lengths (% of mt genome)

ΔHSP-span differences

Distances between concatenated HSPs


min

63.52

31 (0.1)

0

-8

1st quartile

73.74

94 (0.5)

0

215.25

median

78.41

215 (1)

1

320

3rd quartile

84.62

619 (3)

5

585.75

max

100

14836 (89)

160

6129


For each HSP, the ΔHSP-span difference is the absolute value of the difference between the HSP length on nuclear genome and the HSP length on the mitochondrial genome. The distance of -8 bp reported indicates overlapping of two concatenated HSPs on nuclear genome.

Simone et al. BMC Genomics 2011 12:517   doi:10.1186/1471-2164-12-517

Open Data