Additional file 3.
CNM SNPs in LD with GWAS variants and showing co-expression of miR and mRNA. CNM SNPs in LD with variants association with disease traits. All minor allele frequencies (MAF) reported are for the CEU pilot panel of the 1000 Genomes Project, except where indicted. * indicates MAF in low coverage 1000genomes CEU panel. Abbreviations: PMID = PubMed accession, PS = miRanda Pairing Score, ES = miRanda energy score, S-T = seed type, miRlit = evidence of miR and mRNA expression collected from the literature, where numbers indicate pubmed ids, except those beginning with GDS, which indicate the Geoprofile dataset ID for which expression was demonstrated. Co = The number of cell and tissue samples in the mimiRNA database for which co-expression of miR and mRNA were found. eQTL = Reports available eQTL data in the mUTHER study, where F = -Fat cell biopsy (n = 160), L = LCL cells (n = 166), and S = skin cell biopsy (n = 160).
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Richardson et al. BMC Genomics 2011 12:504 doi:10.1186/1471-2164-12-504