Table 3

Function-unknown ORFs predicted by ORF Finder in six Brassica mitotypes

ORF

cam

pol

nap

ole

car

class

ORF

cam

pol

nap

ole

car

class


orf101c

+

+

+

2+

-

GR

orf106a

-

-

+

2+

+

M

orf265

+

+

orf261

orf266*(2+)

orf277

GR

orf108a

+

+

+

+

-

M

orf305

+

+

orf322*

orf311(2+)

orf310*

GR

orf110

+

+

+

2+

-

M

orf101d

+

+

+

2+

-

ID

orf112

+

+

+

2+

-

M

orf117b

-

-

+

2+

+

ID

orf113b

+

+

+

2+

orf170

M

orf122

+

+

-

2+

-

ID

orf114

+

+

+

-

+

M

orf124

-

-

-

-

+

ID

orf115b

+

+

+

2+

-

M

orf128

+

+

+

2+

-

ID

orf117a

+

+

+

+

-

M

orf132

+

+

-

2+

-

ID

orf118

+

+

orf124

orf120a

orf123a

M

orf138a

-

-

-

-

+

ID

orf123

+

+

+

2+

-

M

orf188

-

-

+

-

-

ID

orf125

+

+

+

2+

orf108c

M

orf195

+

+

+

-

-

ID

orf128a

-

-

-

-

+

M

orf222#

-

orf224

orf222

-

-

ID

orf131

-

-

-

-

+

M

orf100a

+

+

+

2+

orf100c

M

orf147

+

+

+

+

orf141

M

orf101e

+

+

+

2+

-

M

orf164

+

+

+

+

-

M

orf101f

+

+

+

+

-

M

orf165

-

-

-

-

+

M

orf105

-

-

-

2+

-

M

orf293

+

+

orf286

-

orf288

M


Total number of function-unknown orf in six mitotypes

24 (44)

25 (45)

26 (46)

24 (44)

16 (36)


Each line presents the homologous ORFs. +, present; -, absent; GR, gene rearrangement; ID, insertion/deletion; M, mutation. ORF copy numbers are shown ahead of +. Class shows the cause of change in each line.

* indicates an exception for class and that the cause is mutation.

# orf222 and orf224 are the same as Table 1.

Data for pol and nap are from our previous report and Handa's results [6], respectively. The total numbers outside parentheses show the changing ORF for each mitotype; the number in parentheses contains the ORFs that exist consistently in the six mitotypes. The total number of ORFs in ole is not plus the multiple copies, if containing the copies the total number is 73.

Chang et al. BMC Genomics 2011 12:497   doi:10.1186/1471-2164-12-497

Open Data