Table 2 |
||||||||
|
Summary of the 51 ABC genes identified in the silkworm genome. |
||||||||
|
subfamily |
Gene |
Size(AA) |
Chr. |
Scaffold |
Position |
Exon |
EST |
probe |
|
|
||||||||
|
A |
BmABC009503 |
1040 |
14 |
nscaf2953 |
1661521..1682998 |
21 |
2 |
sw18797 |
|
|
||||||||
|
A |
BmABC012789 |
1794 |
16 |
nscaf3058 |
7588846..7625968 |
34 |
1 |
sw17785 |
|
|
||||||||
|
A |
BmABC007217 |
1028 |
17 |
nscaf2873 |
124005..140286 |
16 |
1 |
sw08704 |
|
|
||||||||
|
A |
BmABC007221 |
1747 |
17 |
nscaf2873 |
43128..67099 |
24 |
6 |
sw19260 |
|
|
||||||||
|
A |
BmABC007218 |
474 |
17 |
nscaf2873 |
71197..79589 |
9 |
1 |
sw19450 |
|
|
||||||||
|
A |
BmABC004187 |
452 |
19 |
nscaf2770 |
824533..837264 |
8 |
0 |
sw05280 |
|
|
||||||||
|
B |
BmABC000725 |
1149 |
1 |
nscaf1690 |
6582863..6601286 |
22 |
2 |
sw20470 |
|
|
||||||||
|
B |
BmABC000724 |
1307 |
1 |
nscaf1690 |
6553161..6573490 |
26 |
3 |
sw08035 |
|
|
||||||||
|
B |
BmABC005473 |
850 |
8 |
nscaf2828 |
3932738..3950945 |
16 |
4 |
sw12680 |
|
|
||||||||
|
B |
BmABC009452 |
1312 |
14 |
nscaf2953 |
1939875..1966564 |
22 |
0 |
sw01511 |
|
|
||||||||
|
B |
BmABC007494 |
1268 |
15 |
nscaf2887 |
1945690..1965221 |
23 |
3 |
sw11440 |
|
|
||||||||
|
B |
BmABC004142 |
581 |
19 |
nscaf2767 |
4285226..4299688 |
13 |
2 |
sw11283 |
|
|
||||||||
|
B |
BmABC012743 |
702 |
22 |
nscaf3056 |
487542..500932 |
12 |
12 |
sw08227 |
|
|
||||||||
|
B |
BmABC011228 |
1311 |
23 |
nscaf3026 |
3885423..3912497 |
27 |
2 |
sw13612 |
|
|
||||||||
|
C |
BmABC006882 |
1334 |
10 |
nscaf2859 |
1597393..1617896 |
21 |
1 |
sw11399 |
|
|
||||||||
|
C |
BmABC010332 |
1180 |
12 |
nscaf2990 |
12995..30206 |
18 |
1 |
sw20821 |
|
|
||||||||
|
C |
BmABC010331 |
496 |
12 |
nscaf2990 |
39940..44300 |
6 |
1 |
sw18980 |
|
|
||||||||
|
C |
BmABC010636 |
1594 |
12 |
nscaf2998 |
305046..322760 |
22 |
0 |
sw05268 |
|
|
||||||||
|
C |
BmABC010330 |
1251 |
12 |
nscaf2990 |
44879..78780 |
19 |
1 |
sw12816 |
|
|
||||||||
|
C |
BmABC007793 |
305 |
15 |
nscaf2888 |
999476..1002597 |
6 |
0 |
sw12273 |
|
|
||||||||
|
C |
BmABC007738 |
983 |
15 |
nscaf2888 |
908517..930623 |
18 |
6 |
sw20863 |
|
|
||||||||
|
C |
BmABC007769 |
297 |
15 |
nscaf2888 |
134904..141029 |
7 |
2 |
sw20393 |
|
|
||||||||
|
C |
BmABC007785 |
728 |
15 |
nscaf2888 |
767551..792765 |
14 |
4 |
sw02050 |
|
|
||||||||
|
C |
BmABC007735 |
1364 |
15 |
nscaf2888 |
1007371..1038895 |
22 |
11 |
sw07429 |
|
|
||||||||
|
C |
BmABC007784 |
540 |
15 |
nscaf2888 |
751792..764508 |
9 |
1 |
sw04125 |
|
|
||||||||
|
C |
BmABC003359 |
760 |
15 |
nscaf2655 |
606966..624399 |
14 |
0 |
sw09343 |
|
|
||||||||
|
C |
BmABC007792 |
658 |
15 |
nscaf2888 |
984948..994967 |
12 |
0 |
sw19077 |
|
|
||||||||
|
C |
BmABC011220 |
1263 |
23 |
nscaf3026 |
4262367..4292000 |
29 |
2 |
sw18613 |
|
|
||||||||
|
C |
BmABC010849 |
779 |
UN |
nscaf3004 |
47746..61144 |
13 |
2 |
sw20170 |
|
|
||||||||
|
D |
BmABC012688 |
503 |
22 |
nscaf3055 |
13802..26162 |
12 |
1 |
sw12200 |
|
|
||||||||
|
D |
BmABC004616 |
754 |
27 |
nscaf2801 |
381693..398156 |
14 |
0 |
sw19711 |
|
|
||||||||
|
E |
BmABC010129 |
608 |
7 |
nscaf2986 |
3437097..3447398 |
12 |
26 |
sw13221 |
|
|
||||||||
|
F |
BmABC002004 |
622 |
1 |
nscaf2210 |
4610405..4619608 |
11 |
17 |
sw08321 |
|
|
||||||||
|
F |
BmABC006964 |
638 |
10 |
nscaf2860 |
2849092..2861275 |
10 |
1 |
sw09644 |
|
|
||||||||
|
F |
BmABC007869 |
906 |
15 |
nscaf2888 |
4038262..4052670 |
18 |
9 |
sw19088 |
|
|
||||||||
|
G |
BmABC002581 |
498 |
5 |
nscaf2529 |
4518502..4529267 |
7 |
0 |
sw13270 |
|
|
||||||||
|
G |
BmABC002712 |
312 |
5 |
nscaf2529 |
4492836..4497700 |
6 |
0 |
sw15243 |
|
|
||||||||
|
G |
BmABC002922 |
690 |
10 |
nscaf2575 |
3237764..3274876 |
12 |
6 |
sw05247 |
|
|
||||||||
|
G |
BmABC002924 |
458 |
10 |
nscaf2575 |
3311835..3326257 |
8 |
0 |
sw07486 |
|
|
||||||||
|
G |
BmABC012035 |
585 |
11 |
nscaf3034 |
3590330..3612716 |
8 |
2 |
sw03333 |
|
|
||||||||
|
G |
BmABC005226 |
647 |
12 |
nscaf2826 |
44749..62984 |
11 |
4 |
sw13968 |
|
|
||||||||
|
G |
BmABC005203 |
530 |
12 |
nscaf2825 |
7374..22039 |
8 |
3 |
sw15660 |
|
|
||||||||
|
G |
BmABC005202 |
701 |
12 |
nscaf2825 |
75958..87920 |
11 |
1 |
sw05618 |
|
|
||||||||
|
G |
BmABC010555 |
598 |
12 |
nscaf2993 |
5875864..5891335 |
11 |
4 |
sw17556 |
|
|
||||||||
|
G |
BmABC010557 |
470 |
12 |
nscaf2993 |
5970529..5979789 |
8 |
0 |
NO |
|
|
||||||||
|
G |
BmABC000220 |
823 |
22 |
nscaf1681 |
5597989..5616076 |
14 |
0 |
sw08011 |
|
|
||||||||
|
G |
BmABC000472 |
640 |
22 |
nscaf1681 |
5666445..5676633 |
13 |
0 |
sw08685 |
|
|
||||||||
|
G |
BmABC005094 |
727 |
25 |
nscaf2823 |
124639..134335 |
8 |
0 |
sw12687 |
|
|
||||||||
|
H |
BmABC010726 |
791 |
26 |
nscaf3003 |
3211528..3248514 |
15 |
6 |
sw05988 |
|
|
||||||||
|
H |
BmABC010825 |
280 |
26 |
nscaf3003 |
3337089..3347904 |
7 |
1 |
sw18772 |
|
|
||||||||
|
H |
BmABC010760 |
607 |
26 |
nscaf3003 |
7482864..778388 |
10 |
1 |
sw04232 |
|
|
||||||||
|
Liu et al. BMC Genomics 2011 12:491 doi:10.1186/1471-2164-12-491 |
||||||||
