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Open Access Research article

Array CGH Phylogeny: How accurate are Comparative Genomic Hybridization-based trees?

Luz B Gilbert1*, Takao Kasuga2, N Louise Glass3 and John W Taylor3

Author Affiliations

1 Laboratoire de Recherche en Sciences Végétales, UMR CNRS-Université Paul Sabatier 5546, Chemin de Borde Rouge - Auzeville 31326, Castanet Tolosan, France

2 USDA ARS, Plant Pathology Department, UC Davis, Davis, CA, 95616, USA

3 Department of Plant and Microbial Biology, UC Berkeley, Berkeley, CA 94720, USA

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BMC Genomics 2011, 12:487  doi:10.1186/1471-2164-12-487

Published: 6 October 2011

Additional files

Additional file 1:

Additional table S1 - Method matrix listing data treatments that are represented in each figure.

Format: XLS Size: 35KB Download file

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Additional file 2:

Additional table S2 - Figure 2: Neighbor-Joining and GACK Parsimony Analysis when the dataset is only normalized. Figure 2 in table form, with actual tree scores. Zeros are bolded. In excel format.

Format: XLS Size: 48KB Download file

This file can be viewed with: Microsoft Excel Viewer

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Additional file 3:

Additional table S3 - Figure 3: NJ and Parsimony Analysis after Bayesian estimation of a relative hybridization level. Figure 3 in table form, with actual tree scores. Zeros are bolded. In excel format.

Format: XLS Size: 27KB Download file

This file can be viewed with: Microsoft Excel Viewer

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Additional file 4:

Additional table S4 - Figure 4: MPP-Based Tree Construction. Figure 4 in table form, with actual tree scores. Zeros are bolded. In excel format.

Format: XLS Size: 20KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data