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Open Access Research article

Array Comparative Genomic Hybridizations: Assessing the ability to recapture evolutionary relationships using an in silico approach

Luz B Gilbert1*, Lee Chae2, Takao Kasuga3 and John W Taylor4

Author Affiliations

1 Laboratoire de Recherche en Sciences Végétales, UMR CNRS-Université Paul Sabatier 5546, Chemin de Borde Rouge - Auzeville 31326, Castanet Tolosan, France

2 Department of Plant Biology, Carnegie Institution for Science, Stanford, California 94305, USA

3 USDA ARS, Plant Pathology Department, UC Davis, Davis, CA, 95616, USA

4 Department of Plant and Microbial Biology, University of California Berkeley, Berkeley CA 94720, USA

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BMC Genomics 2011, 12:456  doi:10.1186/1471-2164-12-456

Published: 21 September 2011

Additional files

Additional file 1:

Additional Table S1. Tree to Tree distances for all Neighbor-Joining Results.

Format: XLS Size: 26KB Download file

This file can be viewed with: Microsoft Excel Viewer

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Additional file 2:

Additional Table S2. Tree to Tree distances for all Parsimony Results.

Format: XLS Size: 27KB Download file

This file can be viewed with: Microsoft Excel Viewer

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Additional file 3:

Additional Figure S1. Example topologies of Neurospora Parsimony simulation results in pdf format.

Format: PDF Size: 700KB Download file

This file can be viewed with: Adobe Acrobat Reader

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Additional file 4:

Additional Figure S2 Correlation-Based CCC distributions. Balanced topology Cophenetic Correlations Coefficient Distributions for the correlation-based Neighbor-Joining Analysis in pdf format.

Format: PDF Size: 708KB Download file

This file can be viewed with: Adobe Acrobat Reader

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Additional file 5:

Additional Figure S3 Euclidean-Based CCC distributions. Balanced topology Cophenetic Correlations Coefficient Distributions for the Euclidean-based Neighbor-Joining Analysis in pdf format.

Format: PDF Size: 705KB Download file

This file can be viewed with: Adobe Acrobat Reader

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Additional file 6:

Additional Figure S4 Correlation-Based CCC distributions. Pectinate topology Cophenetic Correlations Coefficient Distributions for the correlation-based Neighbor-Joining Analysis in pdf format.

Format: PDF Size: 709KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 7:

Additional Figure S5 Euclidean-Based CCC distributions. Pectinate topology Cophenetic Correlations Coefficient Distributions for the Euclidean-based Neighbor-Joining Analysis in pdf format.

Format: PDF Size: 744KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data