Email updates

Keep up to date with the latest news and content from BMC Genomics and BioMed Central.

Open Access Highly Accessed Research article

Deep sequencing-based transcriptome analysis of Plutella xylostella larvae parasitized by Diadegma semiclausum

Kayvan Etebari1, Robin W Palfreyman2, David Schlipalius3, Lars K Nielsen2, Richard V Glatz4 and Sassan Asgari1*

Author Affiliations

1 School of Biological Sciences, The University of Queensland, St Lucia QLD 4072 Australia

2 Australian Institute for Bioengineering and Nanotechnology, The University of Queensland, St Lucia QLD 4072 Australia

3 AgriScience Queensland, Department of Employment Economic Development and Innovation, Ecosciences Precinct, GPO Box 46, Brisbane 4001, Australia

4 South Australian Research and Development Institute (SARDI), Entomology, Waite Road, Urrbrae, South Australia, 5064, Australia

For all author emails, please log on.

BMC Genomics 2011, 12:446  doi:10.1186/1471-2164-12-446

Published: 9 September 2011

Abstract

Background

Parasitoid insects manipulate their hosts' physiology by injecting various factors into their host upon parasitization. Transcriptomic approaches provide a powerful approach to study insect host-parasitoid interactions at the molecular level. In order to investigate the effects of parasitization by an ichneumonid wasp (Diadegma semiclausum) on the host (Plutella xylostella), the larval transcriptome profile was analyzed using a short-read deep sequencing method (Illumina). Symbiotic polydnaviruses (PDVs) associated with ichneumonid parasitoids, known as ichnoviruses, play significant roles in host immune suppression and developmental regulation. In the current study, D. semiclausum ichnovirus (DsIV) genes expressed in P. xylostella were identified and their sequences compared with other reported PDVs. Five of these genes encode proteins of unknown identity, that have not previously been reported.

Results

De novo assembly of cDNA sequence data generated 172,660 contigs between 100 and 10000 bp in length; with 35% of > 200 bp in length. Parasitization had significant impacts on expression levels of 928 identified insect host transcripts. Gene ontology data illustrated that the majority of the differentially expressed genes are involved in binding, catalytic activity, and metabolic and cellular processes. In addition, the results show that transcription levels of antimicrobial peptides, such as gloverin, cecropin E and lysozyme, were up-regulated after parasitism. Expression of ichnovirus genes were detected in parasitized larvae with 19 unique sequences identified from five PDV gene families including vankyrin, viral innexin, repeat elements, a cysteine-rich motif, and polar residue rich protein. Vankyrin 1 and repeat element 1 genes showed the highest transcription levels among the DsIV genes.

Conclusion

This study provides detailed information on differential expression of P. xylostella larval genes following parasitization, DsIV genes expressed in the host and also improves our current understanding of this host-parasitoid interaction.