Table 3

MEME motifs found in ECF sigma factors

ECF Locus Tag

1

2

3

4

5

6

7

Orthologous BSU locus tag


BAS0964

+

+

+

BAS2285

+

+

+

+

BAS3082

+

+

+

BSU09520 (SigM)

+

+

+

+

BSU27120 (SigV)

+

+

+

+

BSU01730 (SigW)

+

+

+

+

BSU23100 (SigX)

+

+

+

+

BSU38700 (SigY)

+

+

+

+

BSU26840 (SigZ)

+

+

+

+

BSU14730 (YlaC)

BAS0171

+

+

+

BAS0613

+

+

+

BAS1035

+

+

+

+

BAS1626

+

+

BAS1658

+

+

+

+

BAS1966

+

+

+

BAS2323

+

+

+

+

BAS2545

+

+

+

BAS2600

+

+

+

BAS2758

+

+

+

+

BAS3383

+

+

+

BAS4558

+

+

+

+

BAS5212

+

+

+

+

BALH_4199

+

+

+

+

BCAH187_A3458

+

+

BCAH820_1326

+

BCE_1118

+

+

+

+

BCE_5322

+

+

+

Bcer98_3970

+

+

BcerKBAB4_3133

+

+

BcerKBAB4_4716

+

+

+

+

BcerKBAB4_5577

+

+

+

BCQ_1681

+

+


A '+' designates the presence of a motif in the ECF sigma factor gene at the left. MEME motifs are presented here for a representative (from the BAS genome where available; otherwise as the locus tag indicates) gene for each of the ECF sigma factors detected by the analyses.

Schmidt et al. BMC Genomics 2011 12:430   doi:10.1186/1471-2164-12-430

Open Data