Whole-genome phylogenies of the family Bacillaceae and expansion of the sigma factor gene family in the Bacillus cereus species-group
Department of Microbiology and Immunology, Oklahoma University Health Sciences Center, Oklahoma City, OK 73117 USA
BMC Genomics 2011, 12:430 doi:10.1186/1471-2164-12-430Published: 24 August 2011
Additional file 1:
Single-copy genes used in the phylogenetic analysis of the Bacillaceae. Annotations for each of the single-copy gene are from the Paenibacillus genome as submitted to Genbank, one of the outgroups included in the analysis.
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Additional file 2:
Sigma factor genes identified in this study. Locus tags for genes found in each genome follow the locus tag identifier or sigma factor identifier for each ortholog.
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Additional file 3:
Results of MEME analysis of the sigma factor genes identified in iterative BLAST searches. MEME results for 10 motifs (nmotifs = 10) are shown, 7 of which follow phylogenetic patterns that differentiate PA from ECF sigma factors (Tables 2 and 3).
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