Table 6

HLA alleles mistyped in 454 sequencing due to low or unbalanced coverage

Population

HLA allele

# Miscalls

# Correct calls


YRI/CEU

C*04:01

24

35


YRI

A*30:01

8

25


CHB

A*31:01

4

16


JPT/CHB

A*33:03

3

33


YRI

A*30:02

2

7


JPT

C*07:02

1

78


YRI

C*02:10

1

10


CHB

B*46:01

1

15


CEU

B*35:01

1

29


CEU

A*29:02

1

8


CEU

A*11:01

1

32


Erlich et al. BMC Genomics 2011 12:42   doi:10.1186/1471-2164-12-42

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