Table 3

The key pathways that contain an over-representation of regulated genes in pig lungs after incubation with H1N1 SwIV on PID 3 and 7

KEGG pathway(PID 3)

Gene number

KEGG pathway(PID 7)

Gene number


Cell adhesion molecules (CAMs)

17

PPAR signaling pathway

8

Cytokine-cytokine receptor interaction

15

Focal adhesion

8

Toll-like receptor signaling pathway

13

Cytokine-cytokine receptor interaction

8

MAPK signaling pathway

13

Complement and coagulation cascades

7

Focal adhesion

12

Wnt signaling pathway

6

Complement and coagulation cascades

10

Adherens junction

4

T cell receptor signaling pathway

8

ECM-receptor interaction

4

Antigen processing and presentation

7

Toll-like receptor signaling pathway

4

PPAR signaling pathway

5

Cell cycle

4

ECM-receptor interaction

5

Cell adhesion molecules (CAMs)

4

Jak-STAT signaling pathway

4

Natural killer cell mediated cytotoxicity

4

B cell receptor signaling pathway

4

Oxidative phosphorylation

4


At each time-point, the pathway classes were more than the results present in the table. Only these containing relative high gene numbers and low p-Value were chose for analysis.

Li et al. BMC Genomics 2011 12:398   doi:10.1186/1471-2164-12-398

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