Table 6

Best quality miRNA targets identified in reverse-complement sequences of melon unigenes

miRNA annotation

Unigene

Score (miRanda)

Score (TargetFinder)

Annotation


miR167|d

cCI_22-D03-M13R_c

327

--

metalloendopeptidase

miR390|a, b

cCL2179Contig1

317

--

ARAC1, ATGP2, ATRAC1, ROP3, ATROP3 | ARAC1; GTP binding

miR167|d

cPSI_41-B02-M13R_c

200

--

non-annotated unigene

miR157|a, b, c

cCI_04-H02-M13R_c

195

0

non-annotated unigene

miR166|a, b, c, d, e, f, g

cA_31-D02-M13R_c

195

0

non-annotated unigene

miR166|a, b, c, d, e, f, g

cCI_54-H07-M13R_c

195

0

non-annotated unigene

miR166|a, b, c, d, e, f, g

cCI_69-H04-M13R_c

195

1

non-annotated unigene

miR167|a, b

cPSI_41-B02-M13R_c

195

1

non-annotated unigene

miR168|a, b

cCI_38-C07-M13R_c

195

0

non-annotated unigene

miR170|a

cPSI_40-F10-M13R_c

191

0.5

non-annotated unigene

miR397|a

c46d_36-B03-M13R_c

191

1.5

LAC10 (laccase 10); laccase

miR157|d

cCI_04-H02-M13R_c

190

0

non-annotated unigene

miR171|b, c

cPSI_40-F10-M13R_c

190

1

non-annotated unigene

miR319|a, b

c15d_24-H05-M13R_c

190

0

non-annotated unigene

miR165|a, b

cA_31-D02-M13R_c

187

1

non-annotated unigene

miR165|a, b

cCI_54-H07-M13R_c

187

1

non-annotated unigene

miR165|a, b

cCI_69-H04-M13R_c

187

2

non-annotated unigene

miR171|a

cPSI_40-F10-M13R_c

187

2

non-annotated unigene

miR159|a

cCL1409Contig2

183

3

brassinosteroid signaling positive regulator-related

miR159|b

cCL1409Contig2

183

4

brassinosteroid signaling positive regulator-related

miR159|c

cCL1409Contig2

183

4

brassinosteroid signaling positive regulator-related

miR169|a

c15d_10-G06-M13R_c

183

4

non-annotated unigene

miR169|b, c

c15d_10-G06-M13R_c

183

4

non-annotated unigene

miR169|h, i, j, k, l, m, n

c15d_10-G06-M13R_c

183

3

non-annotated unigene

miR156|a, b, c, d, e, f

cCL1781Contig1

181

3

DNA-directed RNA polymerase II, putative (RPB10)

miR167|d_melon

cPSI_41-B02-M13R_c

--

0

non-annotated unigene

miR159|c

c15d_24-H05-M13R_c

--

2

non-annotated unigene

miR159|b

c15d_24-H05-M13R_c

--

2.5

non-annotated unigene


Gonzalez-Ibeas et al. BMC Genomics 2011 12:393   doi:10.1186/1471-2164-12-393

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