Table 1

Summary of individual and combined de novo assembly of the subspecies sequences generated from 454-pyrosequencing

Assembly

Count

Average length

N50 (bp)

Total bases


ssp.

Reads

823,392

403.9

332,578,737

tridentata

Singletons

191,745

403.6

77,391,754

Contigs

20,357

716.0

869

14,587,705


ssp.

Reads

702,001

333.1

233,854,535

vaseyana

Singletons

179,189

331.5

59,402,844

Contigs

20,250

624.0

797

12,641,189


ssp.

Reads

1,525,393

371.3

566,433,272

combined

Singletons

275,866

370.2

102,121,262

Contigs

29,541

796.0

1,003

23,521,465


Bajgain et al. BMC Genomics 2011 12:370   doi:10.1186/1471-2164-12-370

Open Data