Additional file 3.
A list of contigs containing discriminatory SNPs between ssp. tridentata and ssp. vaseyana including contig name, SNP position, base for each subspecie, read count per base, flagged contigs with >13 SNPs, and SNPs that were found to be heterogeneous when the parameter of homogeneity was raised to 99%.
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Bajgain et al. BMC Genomics 2011 12:370 doi:10.1186/1471-2164-12-370