Table 1

Number of polymorphisms detected and selected in the different sequencing sets.

Number of polymorphisms (number of fragments or contigs represented)


Number of fragments or contigs available for detection

Detected

Functionality

score ≥ 0.4

Selected for the assay


Validated SNPsa

-

-

-

229 (132)

in vitro polymorphisms, set 1

49

572 (49)

352 (48)

37 (19)

in vitro polymorphisms, set 2

392

1,678 (375)

1,015 (367)

560 (325)

in silico polymorphisms, set 3

1,532

4,376 (587)

1,431 (518)

710 (424)


TOTAL

1,967

6,626 (1005)

2,798 (927)

1,536 (885)


a From Lepoittevin et al. (2010) including 110 SNPs detected in 35 fragments from in vitro polymorphisms, set 1.

Chancerel et al. BMC Genomics 2011 12:368   doi:10.1186/1471-2164-12-368

Open Data