Table 1

Gene libraries providing sequences for EuroPineDB

Gene library

Tissue

Species

Experimental conditions


Pp-454

Roots, stem, embryos, callus, cones, male and female strobili, buds, xylem, phloem.

P. pinaster

ESTs from several different tissues

LG0BCA

Buds

P. pinaster

ESTs, adult buds

GEMINIa

Xylem

P. pinaster

ESTs from normal, compression, opposite, early and late wood

SSH Xylem

Xylem

P. pinaster

SSH, compression vs. opposite, and juvenile vs. mature

UPM

Roots, stem, needles

P. pinaster

SSH, drought stress

ARG

Roots

P. pinaster

SSH, ammonium excess vs. ammonium deficiency

SSH Lac-Pine

Roots

P. pinaster

SSH, inoculated with Laccaria bicolor vs. not inoculated

SSH Mic

Roots

P. pinaster

SSH, mycorrhizal vs. not mycorrhizal

CK16b

Cotyledons

P. pinea

SSH, adventitious shoot induction

SSH Embryos

Embryos

P. sylvestris

SSH, lack of N vs. normal N

Pin

Cotyledons

P. sylvestris

ESTs from photosynthetic tissues

EMBL v. 102

-

P. pinaster, P. pinea, P. sylvestris

Miscellaneous


a GEMINI gene library was described in [8]

b CK16 gene library was described in [4]

Fern├índez-Pozo et al. BMC Genomics 2011 12:366   doi:10.1186/1471-2164-12-366

Open Data