Table 1

Distribution and density analysis of TCDD-induced AhR enriched regionsa in the mouse genome.

Genic Regionc


Genome

Intergenic DNAb

Intragenic DNAb

10kb upstream

5' UTR

CDS

3' UTR


2 hr

AhR enrichment

14,446

4,163

10,283

4,601

2,569

7,499

225

Enrichment densityd

5.44

2.62

9.64

18.65

17.29

7.21

7.29


24 hr

AhR enrichment

974

344

630

306

132

507

9

Enrichment densityd

0.37

0.22

0.59

1.24

0.89

0.49

0.29


a AhR enriched regions with a FDR < 0.01

b intergenic, intragenic and gene regions are defined as previously described in Additional File 1

c regions are defined using the genomic locations in the refGene database from the UCSC Genome Browser

d density calculated per million base pairs

Dere et al. BMC Genomics 2011 12:365   doi:10.1186/1471-2164-12-365

Open Data