Table 6 |
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|
Comparison of A. hypochondriacus (Ah) and A. tuberculatus (At) transcriptomes: number of hits (isotigs/contigs) to herbicide target-site genes in the UniRef 100 and other databases |
||||
|
UniRef 100 Annotation |
Annotation: all databasesa |
|||
|
Herbicide Target-site Gene |
Hit in Ah and At |
Hit in Ah only |
Hit in At only |
Ah |
|
|
||||
|
Tubulin |
11 |
4 |
4 |
34 |
|
Acetolactate synthase |
2 |
0 |
1 |
5 |
|
Protoporphyrinogen oxidase |
1 |
1 |
2 |
2 |
|
Glutamine synthetase |
6 |
1 |
0 |
11 |
|
1-Deoxy-D-Xylulose-5-phosphate synthase |
3 |
3 |
1 |
3 |
|
4-Hydroxyphenylpyruvate dioxygenase |
3 |
0 |
0 |
3 |
|
Acetyl-CoA carboxylase |
1 |
4 |
0 |
13 |
|
Phytoene desaturase |
2 |
0 |
0 |
2 |
|
5-Enolpyruvylshikimate-3-phosphate synthase |
0 |
0 |
0 |
1 |
|
Dihydropteroate synthase |
0 |
0 |
0 |
1 |
|
D1 protein (plastidic gene) |
0 |
0 |
0 |
2 |
|
|
||||
|
anr, TAIR, UniRef 100, UniRef 50, Amaranthaceae ESTs databases. |
||||
|
Délano-Frier et al. BMC Genomics 2011 12:363 doi:10.1186/1471-2164-12-363 |
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