Table 6

Comparison of A. hypochondriacus (Ah) and A. tuberculatus (At) transcriptomes: number of hits (isotigs/contigs) to herbicide target-site genes in the UniRef 100 and other databases

UniRef 100 Annotation

Annotation: all databasesa

Herbicide Target-site Gene

Hit in Ah and At

Hit in Ah only

Hit in At only

Ah


Tubulin

11

4

4

34

Acetolactate synthase

2

0

1

5

Protoporphyrinogen oxidase

1

1

2

2

Glutamine synthetase

6

1

0

11

1-Deoxy-D-Xylulose-5-phosphate synthase

3

3

1

3

4-Hydroxyphenylpyruvate dioxygenase

3

0

0

3

Acetyl-CoA carboxylase

1

4

0

13

Phytoene desaturase

2

0

0

2

5-Enolpyruvylshikimate-3-phosphate synthase

0

0

0

1

Dihydropteroate synthase

0

0

0

1

D1 protein (plastidic gene)

0

0

0

2


anr, TAIR, UniRef 100, UniRef 50, Amaranthaceae ESTs databases.

Délano-Frier et al. BMC Genomics 2011 12:363   doi:10.1186/1471-2164-12-363

Open Data